Package: easyPubMed 3.1.3
easyPubMed: Search and Retrieve Scientific Publication Records from PubMed
Query NCBI Entrez and retrieve PubMed records in XML or text format. Process PubMed records by extracting and aggregating data from selected fields. A large number of records can be easily downloaded via this simple-to-use interface to the NCBI PubMed API.
Authors:
easyPubMed_3.1.3.tar.gz
easyPubMed_3.1.3.zip(r-4.5)easyPubMed_3.1.3.zip(r-4.4)easyPubMed_3.1.3.zip(r-4.3)
easyPubMed_3.1.3.tgz(r-4.4-any)easyPubMed_3.1.3.tgz(r-4.3-any)
easyPubMed_3.1.3.tar.gz(r-4.5-noble)easyPubMed_3.1.3.tar.gz(r-4.4-noble)
easyPubMed_3.1.3.tgz(r-4.4-emscripten)easyPubMed_3.1.3.tgz(r-4.3-emscripten)
easyPubMed.pdf |easyPubMed.html✨
easyPubMed/json (API)
# Install 'easyPubMed' in R: |
install.packages('easyPubMed', repos = c('https://dami82.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dami82/easypubmed/issues
- epm_samples - Preprocessed PubMed Records and Data
- epm_stopwords - PubMed Query Stopwords
Last updated 9 months agofrom:6affef0e1a. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 29 2024 |
R-4.5-win | OK | Sep 29 2024 |
R-4.5-linux | OK | Sep 29 2024 |
R-4.4-win | OK | Sep 29 2024 |
R-4.4-mac | OK | Sep 29 2024 |
R-4.3-win | OK | Sep 29 2024 |
R-4.3-mac | OK | Sep 29 2024 |
Exports:epm_fetchepm_import_xmlepm_parseepm_parse_recordepm_queryepm_query_by_fulltitleepm_query_by_pmidfetch_pubmed_datafetchEPMDataget_epm_dataget_epm_metaget_epm_rawget_epm_uilistget_pubmed_idsgetEPMDatagetEPMJobListgetEPMMetagetEPMMiscgetEPMQuerygetEPMRawgetEPMUilistparseEPMDatasetEPMDatasetEPMJobListsetEPMMetasetEPMMiscsetEPMQuerysetEPMRawsetEPMUilisttable_articles_byAuth
Dependencies:rlang
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Class easyPubMed. | easyPubMed-class initialize,easyPubMed-method |
Fetch Raw Records from Pubmed. | epm_fetch |
Import PubMed Records from Local Files. | epm_import_xml |
Extract Information from a Raw PubMed Record. | epm_parse |
Extract Information from a Raw PubMed Record. | epm_parse_record |
Search for PubMed Records. | epm_query |
Query PubMed by Full-length Title. | epm_query_by_fulltitle |
Query PubMed by PMIDs. | epm_query_by_pmid |
Preprocessed PubMed Records and Data | epm_samples |
PubMed Query Stopwords | epm_stopwords |
Retrieve PubMed Data in XML or TXT Format | fetch_pubmed_data |
Method fetchEPMData. | fetchEPMData fetchEPMData,easyPubMed,list-method |
Get Processed Data from an easyPubMed Object. | get_epm_data |
Get Meta Data from an easyPubMed Object. | get_epm_meta |
Get Raw Data from an easyPubMed Object. | get_epm_raw |
Get PubMed Record Identifiers from an easyPubMed Object. | get_epm_uilist |
Simple PubMed Record Search | get_pubmed_ids |
Method getEPMData. | getEPMData getEPMData,easyPubMed-method |
Method getEPMJobList. | getEPMJobList getEPMJobList,easyPubMed-method |
Method getEPMMeta. | getEPMMeta getEPMMeta,easyPubMed-method |
Method getEPMMisc. | getEPMMisc getEPMMisc,easyPubMed-method |
Method getEPMQuery. | getEPMQuery getEPMQuery,easyPubMed-method |
Method getEPMRaw. | getEPMRaw getEPMRaw,easyPubMed-method |
Method getEPMUilist. | getEPMUilist getEPMUilist,easyPubMed-method |
Method parseEPMData. | parseEPMData parseEPMData,easyPubMed,list-method |
Print method of the easyPubMed Class. | print,easyPubMed-method |
Method setEPMData. | setEPMData setEPMData,easyPubMed,data.frame-method |
Method setEPMJobList. | setEPMJobList setEPMJobList,easyPubMed,data.frame-method |
Method setEPMMeta. | setEPMMeta setEPMMeta,easyPubMed,list-method |
Method setEPMMisc. | setEPMMisc setEPMMisc,easyPubMed,list-method |
Method setEPMQuery. | setEPMQuery setEPMQuery,easyPubMed,character-method |
Method setEPMRaw. | setEPMRaw setEPMRaw,easyPubMed,list-method |
Method setEPMUilist. | setEPMUilist setEPMUilist,easyPubMed,list-method |
Show method of the easyPubMed Class. | show,easyPubMed-method |
Extract Publication and Affiliation Data from PubMed Records | table_articles_byAuth |