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  "Package": "easyPubMed",
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  "Title": "Search and Retrieve Scientific Publication Records from PubMed",
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  "Date": "2023-01-02",
  "Author": "Damiano Fantini",
  "Maintainer": "Damiano Fantini <damiano.fantini@gmail.com>",
  "Description": "Query NCBI Entrez and retrieve PubMed records in XML or\ntext format. Process PubMed records by extracting and\naggregating data from selected fields. A large number of\nrecords can be easily downloaded via this simple-to-use\ninterface to the NCBI PubMed API.",
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    },
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    },
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    },
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    },
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    "epm_import_xml",
    "epm_parse",
    "epm_parse_record",
    "epm_query",
    "epm_query_by_fulltitle",
    "epm_query_by_pmid",
    "fetch_pubmed_data",
    "fetchEPMData",
    "get_epm_data",
    "get_epm_meta",
    "get_epm_raw",
    "get_epm_uilist",
    "get_pubmed_ids",
    "getEPMData",
    "getEPMJobList",
    "getEPMMeta",
    "getEPMMisc",
    "getEPMQuery",
    "getEPMRaw",
    "getEPMUilist",
    "parseEPMData",
    "setEPMData",
    "setEPMJobList",
    "setEPMMeta",
    "setEPMMisc",
    "setEPMQuery",
    "setEPMRaw",
    "setEPMUilist",
    "table_articles_byAuth"
  ],
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    {
      "name": "epm_samples",
      "title": "Preprocessed PubMed Records and Data",
      "object": "epm_samples",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "epm_stopwords",
      "title": "PubMed Query Stopwords",
      "object": "epm_stopwords",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "easyPubMed-class",
      "title": "Class easyPubMed.",
      "topics": [
        "easyPubMed-class",
        "initialize,easyPubMed-method"
      ]
    },
    {
      "page": "epm_fetch",
      "title": "Fetch Raw Records from Pubmed.",
      "topics": [
        "epm_fetch"
      ]
    },
    {
      "page": "epm_import_xml",
      "title": "Import PubMed Records from Local Files.",
      "topics": [
        "epm_import_xml"
      ]
    },
    {
      "page": "epm_parse",
      "title": "Extract Information from a Raw PubMed Record.",
      "topics": [
        "epm_parse"
      ]
    },
    {
      "page": "epm_parse_record",
      "title": "Extract Information from a Raw PubMed Record.",
      "topics": [
        "epm_parse_record"
      ]
    },
    {
      "page": "epm_query",
      "title": "Search for PubMed Records.",
      "topics": [
        "epm_query"
      ]
    },
    {
      "page": "epm_query_by_fulltitle",
      "title": "Query PubMed by Full-length Title.",
      "topics": [
        "epm_query_by_fulltitle"
      ]
    },
    {
      "page": "epm_query_by_pmid",
      "title": "Query PubMed by PMIDs.",
      "topics": [
        "epm_query_by_pmid"
      ]
    },
    {
      "page": "epm_samples",
      "title": "Preprocessed PubMed Records and Data",
      "topics": [
        "epm_samples"
      ]
    },
    {
      "page": "epm_stopwords",
      "title": "PubMed Query Stopwords",
      "topics": [
        "epm_stopwords"
      ]
    },
    {
      "page": "fetch_pubmed_data",
      "title": "Retrieve PubMed Data in XML or TXT Format",
      "topics": [
        "fetch_pubmed_data"
      ]
    },
    {
      "page": "fetchEPMData",
      "title": "Method fetchEPMData.",
      "topics": [
        "fetchEPMData",
        "fetchEPMData,easyPubMed,list-method"
      ]
    },
    {
      "page": "get_epm_data",
      "title": "Get Processed Data from an easyPubMed Object.",
      "topics": [
        "get_epm_data"
      ]
    },
    {
      "page": "get_epm_meta",
      "title": "Get Meta Data from an easyPubMed Object.",
      "topics": [
        "get_epm_meta"
      ]
    },
    {
      "page": "get_epm_raw",
      "title": "Get Raw Data from an easyPubMed Object.",
      "topics": [
        "get_epm_raw"
      ]
    },
    {
      "page": "get_epm_uilist",
      "title": "Get PubMed Record Identifiers from an easyPubMed Object.",
      "topics": [
        "get_epm_uilist"
      ]
    },
    {
      "page": "get_pubmed_ids",
      "title": "Simple PubMed Record Search",
      "topics": [
        "get_pubmed_ids"
      ]
    },
    {
      "page": "getEPMData",
      "title": "Method getEPMData.",
      "topics": [
        "getEPMData",
        "getEPMData,easyPubMed-method"
      ]
    },
    {
      "page": "getEPMJobList",
      "title": "Method getEPMJobList.",
      "topics": [
        "getEPMJobList",
        "getEPMJobList,easyPubMed-method"
      ]
    },
    {
      "page": "getEPMMeta",
      "title": "Method getEPMMeta.",
      "topics": [
        "getEPMMeta",
        "getEPMMeta,easyPubMed-method"
      ]
    },
    {
      "page": "getEPMMisc",
      "title": "Method getEPMMisc.",
      "topics": [
        "getEPMMisc",
        "getEPMMisc,easyPubMed-method"
      ]
    },
    {
      "page": "getEPMQuery",
      "title": "Method getEPMQuery.",
      "topics": [
        "getEPMQuery",
        "getEPMQuery,easyPubMed-method"
      ]
    },
    {
      "page": "getEPMRaw",
      "title": "Method getEPMRaw.",
      "topics": [
        "getEPMRaw",
        "getEPMRaw,easyPubMed-method"
      ]
    },
    {
      "page": "getEPMUilist",
      "title": "Method getEPMUilist.",
      "topics": [
        "getEPMUilist",
        "getEPMUilist,easyPubMed-method"
      ]
    },
    {
      "page": "parseEPMData",
      "title": "Method parseEPMData.",
      "topics": [
        "parseEPMData",
        "parseEPMData,easyPubMed,list-method"
      ]
    },
    {
      "page": "easyPubMed-print",
      "title": "Print method of the easyPubMed Class.",
      "topics": [
        "print,easyPubMed-method"
      ]
    },
    {
      "page": "setEPMData",
      "title": "Method setEPMData.",
      "topics": [
        "setEPMData",
        "setEPMData,easyPubMed,data.frame-method"
      ]
    },
    {
      "page": "setEPMJobList",
      "title": "Method setEPMJobList.",
      "topics": [
        "setEPMJobList",
        "setEPMJobList,easyPubMed,data.frame-method"
      ]
    },
    {
      "page": "setEPMMeta",
      "title": "Method setEPMMeta.",
      "topics": [
        "setEPMMeta",
        "setEPMMeta,easyPubMed,list-method"
      ]
    },
    {
      "page": "setEPMMisc",
      "title": "Method setEPMMisc.",
      "topics": [
        "setEPMMisc",
        "setEPMMisc,easyPubMed,list-method"
      ]
    },
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      "topics": [
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        "setEPMQuery,easyPubMed,character-method"
      ]
    },
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        "setEPMRaw,easyPubMed,list-method"
      ]
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    {
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        "setEPMUilist,easyPubMed,list-method"
      ]
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      "topics": [
        "show,easyPubMed-method"
      ]
    },
    {
      "page": "table_articles_byAuth",
      "title": "Extract Publication and Affiliation Data from PubMed Records",
      "topics": [
        "table_articles_byAuth"
      ]
    }
  ],
  "_readme": "https://github.com/dami82/easypubmed/raw/HEAD/README.md",
  "_rundeps": [
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      "source": "easyPubMed_demo.Rmd",
      "filename": "easyPubMed_demo.html",
      "title": "Retrieving and Processing PubMed Records using easyPubMed",
      "author": "Damiano Fantini",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Notes",
        "New features of easyPubMed version r this_epm_ver",
        "Installation",
        "Stable Version",
        "Dev Version(s)",
        "Tutorial",
        "Overview",
        "Advanced Operations",
        "Non-standard PubMed Queries",
        "Retrieve non-XML Records",
        "Queries Returning Large Numbers of Records",
        "Save Raw Records Locally",
        "Alternative Approaches for Record Parsing",
        "Software Maintenance and Life Cycle",
        "Additional Information",
        "More info, other examples and vignettes, and Advanced Guides",
        "References",
        "Feedback, Citations and Collaborations",
        "SessionInfo"
      ],
      "created": "2023-11-23 17:12:27",
      "modified": "2024-01-03 14:51:51",
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