Package: TCGAretriever 1.9.1

TCGAretriever: Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data

The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <https://www.cbioportal.org/> for more information).

Authors:Damiano Fantini

TCGAretriever_1.9.1.tar.gz
TCGAretriever_1.9.1.zip(r-4.5)TCGAretriever_1.9.1.zip(r-4.4)TCGAretriever_1.9.1.zip(r-4.3)
TCGAretriever_1.9.1.tgz(r-4.4-any)TCGAretriever_1.9.1.tgz(r-4.3-any)
TCGAretriever_1.9.1.tar.gz(r-4.5-noble)TCGAretriever_1.9.1.tar.gz(r-4.4-noble)
TCGAretriever_1.9.1.tgz(r-4.4-emscripten)TCGAretriever_1.9.1.tgz(r-4.3-emscripten)
TCGAretriever.pdf |TCGAretriever.html✨
TCGAretriever/json (API)

# Install 'TCGAretriever' in R:
install.packages('TCGAretriever', repos = c('https://dami82.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dami82/tcgaretriever/issues

Datasets:

On CRAN:

4.06 score 23 scripts 233 downloads 1 mentions 11 exports 19 dependencies

Last updated 10 months agofrom:ad4a60ac82. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winOKOct 25 2024
R-4.5-linuxOKOct 25 2024
R-4.4-winOKOct 25 2024
R-4.4-macOKOct 25 2024
R-4.3-winOKOct 25 2024
R-4.3-macOKOct 25 2024

Exports:expand_casesfetch_all_tcgadataget_cancer_studiesget_cancer_typesget_case_listsget_clinical_dataget_gene_identifiersget_genetic_profilesget_molecular_dataget_mutation_datamake_groups

Dependencies:askpassclicurlgluehttrjsonlitelifecyclemagrittrmimeopensslplyrR6Rcppreshape2rlangstringistringrsysvctrs

Getting started with TCGAretriever

Damiano Fantini

Rendered fromgetting_started_with_TCGAretriever.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-01-29
Started: 2023-07-09