Package: TCGAretriever 1.10.3

TCGAretriever: Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data

The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <https://www.cbioportal.org/> for more information).

Authors:Damiano Fantini [aut, cre]

TCGAretriever_1.10.3.tar.gz
TCGAretriever_1.10.3.zip(r-4.7)TCGAretriever_1.10.3.zip(r-4.6)TCGAretriever_1.10.3.zip(r-4.5)
TCGAretriever_1.10.3.tgz(r-4.6-any)TCGAretriever_1.10.3.tgz(r-4.5-any)
TCGAretriever_1.10.3.tar.gz(r-4.7-any)TCGAretriever_1.10.3.tar.gz(r-4.6-any)
TCGAretriever_1.10.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
TCGAretriever/json (API)

# Install 'TCGAretriever' in R:
install.packages('TCGAretriever', repos = c('https://dami82.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dami82/tcgaretriever/issues

Datasets:

On CRAN:

Conda:

4.72 score 35 scripts 305 downloads 1 mentions 12 exports 19 dependencies

Last updated from:8b8ba1d615. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK147
source / vignettesOK190
linux-release-x86_64OK156
macos-release-arm64OK130
macos-oldrel-arm64OK129
windows-develOK86
windows-releaseOK74
windows-oldrelOK74
wasm-releaseOK120

Exports:check_TCGAretriever_connectionexpand_casesfetch_all_tcgadataget_cancer_studiesget_cancer_typesget_case_listsget_clinical_dataget_gene_identifiersget_genetic_profilesget_molecular_dataget_mutation_datamake_groups

Dependencies:askpassclicurlgluehttrjsonlitelifecyclemagrittrmimeopensslplyrR6Rcppreshape2rlangstringistringrsysvctrs

Get started with TCGAretriever

Damiano Fantini

Rendered fromget_started_with_TCGAretriever.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2026-02-23
Started: 2026-02-23